PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0198759.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 65aa    MW: 7433.31 Da    PI: 4.6106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0198759.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-051834117
                     EEETTTTEEESSHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLk 17
                     y Cp+Cgk+++  + L+
  Lj0g3v0198759.1 18 YICPNCGKRYNALDALR 34
                     89*********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577832.04E-10457No hitNo description
Gene3DG3DSA:3.30.40.109.7E-21463IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MKHKLKDELE NKNTLQEYIC PNCGKRYNAL DALRLISFED EDFHCESCNG KLEVESDKIA  60
AQEGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.260651e-76cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0198759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1473348e-74BT147334.1 Lotus japonicus clone JCVI-FLLj-22B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329926.12e-39general transcription factor IIE subunit 1-like
TrEMBLA0A371FFJ82e-37A0A371FFJ8_MUCPR; Tfa1
STRINGGLYMA05G07910.13e-37(Glycine max)