PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0198759.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 135aa    MW: 15379.5 Da    PI: 6.4996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0198759.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002888104117
                      EEETTTTEEESSHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                      y Cp+Cgk+++  + L+
  Lj0g3v0198759.2  88 YICPNCGKRYNALDALR 104
                      89*********998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005314.5E-172133IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
Gene3DG3DSA:3.30.40.108.6E-2074133IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577831.7E-974127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MNIFVMYIFL TVILPQTAKG AKIYSAAVAA NADGQHTGKE GEEKVKLHTH SYCCLDYAQI  60
YDVTRYRLHR MKHKLKDELE NKNTLQEYIC PNCGKRYNAL DALRLISFED EDFHCESCNG  120
KLEVESDKIA AQEGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.260651e-157cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0198759.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1473341e-154BT147334.1 Lotus japonicus clone JCVI-FLLj-22B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329926.17e-79general transcription factor IIE subunit 1-like
TrEMBLA0A371FFJ81e-76A0A371FFJ8_MUCPR; Tfa1
STRINGGLYMA05G07910.11e-76(Glycine max)