PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0198759.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 207aa    MW: 23938 Da    PI: 8.1299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0198759.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051160176117
                      EEETTTTEEESSHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                      y Cp+Cgk+++  + L+
  Lj0g3v0198759.3 160 YICPNCGKRYNALDALR 176
                      89*********998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5134432.0155137IPR017919Transcription factor TFE/TFIIEalpha HTH domain
SMARTSM005311.2E-5837205IPR002853Transcription initiation factor IIE subunit alpha, N-terminal
PfamPF020023.1E-73995IPR024550TFIIEalpha/SarR/Rpc3 HTH domain
SuperFamilySSF467859.87E-63996IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-54199IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.30.40.102.1E-19146205IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF577834.17E-9146199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006367Biological Processtranscription initiation from RNA polymerase II promoter
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MIEPYNKLVK LAARAFYDDL TSKGDNQPKS GRSDNRGIAV VVLDALTRRQ WVREEDLAKD  60
LKLHTKQLRR TLRFFEEEKF ITRDHRRETA KGAKIYSAAV AANADGQHTG KEGEEKVKLH  120
THSYCCLDYA QIYDVTRYRL HRMKHKLKDE LENKNTLQEY ICPNCGKRYN ALDALRLISF  180
EDEDFHCESC NGKLEVESDK IAAQEGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iy6_Q6e-114120232167General transcription factor IIE subunit 1
5iy7_Q6e-114120232167General transcription factor IIE subunit 1
5iy8_Q6e-114120232167General transcription factor IIE subunit 1
5iy9_Q6e-114120232167General transcription factor IIE subunit 1
5iya_Q6e-114120232167General transcription factor IIE subunit 1
5iyb_Q6e-114120232167General transcription factor IIE subunit 1
5iyc_Q6e-114120232167General transcription factor IIE subunit 1
5iyd_Q6e-114120232167General transcription factor IIE subunit 1
6o9l_Q6e-114120232167General transcription factor IIE subunit 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.260651e-157cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0198759.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1473341e-154BT147334.1 Lotus japonicus clone JCVI-FLLj-22B6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027329926.11e-147general transcription factor IIE subunit 1-like
TrEMBLA0A371FFJ81e-145A0A371FFJ8_MUCPR; Tfa1
STRINGGLYMA05G07910.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2430811