PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0202379.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 250aa    MW: 28563.4 Da    PI: 8.4181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0202379.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63.1e-1570122155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++ +hn+ Er RR++iN+ ++ Lr+llP  +   + kK+s  ++  ++++YI +Lq
  Lj0g3v0202379.2  70 KKLSHNASERDRRKKINTLIASLRSLLPGqD---QTKKMSIPATISQVIKYIPELQ 122
                      6789*************************55...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.85669121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-1270126No hitNo description
PfamPF000101.7E-1270122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-1470126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1670140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1075127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLPFLPTPVF SYSNMESLLD EDPFSHNQSY FNKESVSSSE YSFPHQFSSP QPQVEVEKST  60
SPSPDTTMVK KLSHNASERD RRKKINTLIA SLRSLLPGQD QTKKMSIPAT ISQVIKYIPE  120
LQKQVKGQTK KKEKLLPKII SQGDAVNEES PGKKIPHHNS DFIVSNSWLN DSEAAIHISS  180
YEAHHKTPLT EILLCLENNG YFLLNASSTE TFGGRIFYNL HFQVEKTQRL ESDILTQKLL  240
SIYEKKQWMF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.76130.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0202379.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1467190.0BT146719.1 Lotus japonicus clone JCVI-FLLj-11D4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027353205.11e-113transcription factor ORG2-like
TrEMBLI3T1X10.0I3T1X1_LOTJA; Uncharacterized protein
STRINGGLYMA03G28630.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56980.12e-36bHLH family protein