PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0203079.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 151aa    MW: 16255.4 Da    PI: 9.7821
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0203079.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-192475155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykG+r +k +g+WvAeIr+p   + kr r++lg++ t+  Aa+a++ a  +l+g
  Lj0g3v0203079.1 24 TKYKGIRMRK-WGKWVAEIREP---NpKRSRIWLGSYNTPIAAARAYDTAVYCLRG 75
                     69******99.**********9...8899*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-122475IPR001471AP2/ERF domain
CDDcd000188.07E-262485No hitNo description
PROSITE profilePS5103222.7212583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-302584IPR001471AP2/ERF domain
SMARTSM003802.7E-342589IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-212584IPR016177DNA-binding domain
PRINTSPR003673.5E-112637IPR001471AP2/ERF domain
PRINTSPR003673.5E-116585IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MAGEGRARAA AKKRGSTEGE EETTKYKGIR MRKWGKWVAE IREPNPKRSR IWLGSYNTPI  60
AAARAYDTAV YCLRGPSARL NFPELAGEFA AAAAAATDMW AEPIKKVAAE VGARVDALQL  120
PHQPAPAPAP AAAAADREVV DLNQMPEANN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1722841173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0203079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-38AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551002.14e-54ethylene-responsive transcription factor ERF008
RefseqXP_028209839.14e-54ethylene-responsive transcription factor ERF008-like
SwissprotQ8W3M32e-40RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLA0A445G7T61e-52A0A445G7T6_GLYSO; Ethylene-responsive transcription factor ERF008
TrEMBLI1MVU71e-52I1MVU7_SOYBN; Uncharacterized protein
STRINGGLYMA17G18580.12e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.11e-37related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]