PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0214919.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 243aa    MW: 27886.3 Da    PI: 10.4159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0214919.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r+ W + Ede+l ++v+q+G  +W+ I++++  gR++k+c++rw++ 
  Lj0g3v0214919.1 19 RDHWRPLEDEKLRQLVNQHGAQNWNFISEHLE-GRSGKSCRLRWYNQ 64
                     678*****************************.************96 PP
2Myb_DNA-binding414.3e-1373113345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++T eE+e+l+ + k  G+  W++Iar+++ gRt++ +k++++
  Lj0g3v0214919.1  73 PFTDEEEEKLLSLNKVKGNQ-WASIARYFP-GRTDNAVKNYFH 113
                      79****************99.*********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9741469IPR017930Myb domain
SuperFamilySSF466892.62E-2717112IPR009057Homeodomain-like
SMARTSM007172.1E-141867IPR001005SANT/Myb domain
PfamPF002491.6E-151965IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-242172IPR009057Homeodomain-like
CDDcd001673.24E-132263No hitNo description
SMARTSM007172.1E-1070118IPR001005SANT/Myb domain
PROSITE profilePS5129414.3470120IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-1773118IPR009057Homeodomain-like
CDDcd001671.95E-973113No hitNo description
PfamPF002497.2E-1173113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVRSRSSSSN NERKQSCYRD HWRPLEDEKL RQLVNQHGAQ NWNFISEHLE GRSGKSCRLR  60
WYNQLNPNII KFPFTDEEEE KLLSLNKVKG NQWASIARYF PGRTDNAVKN YFHGLMARRR  120
KKERRTLFGD KFGHISRINF NSQNFKNTEI FYVPYNSQAP TTPLTLTSSS STITSSKAHK  180
DSSVSSCVGE KVKPFDLEKI SNASPAFVGS WILGTYKSFT APSLPSIGKV DPLPKFSYTN  240
YGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-292211910107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RRRKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0214919.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361610.16e-97transcription factor MYB56
TrEMBLV7AYP59e-90V7AYP5_PHAVU; Uncharacterized protein
STRINGXP_007137729.11e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.14e-56myb domain protein 69