PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0215159.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 113aa    MW: 13061.1 Da    PI: 4.5423
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0215159.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.36.5e-1066110247
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 
                      fY++YA+  GF  rk+  +k  ++g+i++r++vC+k g+r+e++ k
  Lj0g3v0215159.1  66 FYHKYAQYRGFASRKDDVYKD-NDGNIVTRQLVCNKAGRRHEKHFK 110
                      9******************98.8999**************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-766110IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MATFGEEGCV NLSDDVNDLV NNEEENQHEK DSKSDSEGEC YKKINELTAD DIRGLEFSTE  60
EEGCLFYHKY AQYRGFASRK DDVYKDNDGN IVTRQLVCNK AGRRHEKHFK NND
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0215159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1349730.0BT134973.1 Lotus japonicus clone JCVI-FLLj-24B19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015970857.15e-20protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI3S3C63e-75I3S3C6_LOTJA; Uncharacterized protein
STRINGAET021241e-15(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.14e-10FAR1-related sequence 7