PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0220789.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 171aa MW: 20254.5 Da PI: 10.2883

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0220789.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	142.6	4.1e-44	2	167	208	373
GRAS 208 lqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 ++ ++llde+ +++s+rd+vL l+++++P+++ + + + n++ F++rf eal ++sa+fd+l++ ++re+++r++ Ere++g++ +nv+ace Lj0g3v0220789.1 2 MRFKNLLDETSEMNSPRDAVLLLIRKINPDIFAQAIINGSFNTPFFATRFREALFHFSAVFDMLDTVISRENQWRMMNEREIIGPNSMNVIACE 95 678899************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 g+er+er et+++W+ r ++aGFk++pl++k +++ ++ lrk + d + ++e+s+++++ Wk+r L ++ W Lj0g3v0220789.1 96 GFERVERPETYKQWQVRNTRAGFKQLPLNQKLMAKFRSKLRKWQPDNFLIDEDSNWMLQSWKGRILSGCTIW 167 ****************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	24.983	1	148	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-41	2	167	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MMRFKNLLDE TSEMNSPRDA VLLLIRKINP DIFAQAIING SFNTPFFATR FREALFHFSA 60 VFDMLDTVIS RENQWRMMNE REIIGPNSMN VIACEGFERV ERPETYKQWQ VRNTRAGFKQ 120 LPLNQKLMAK FRSKLRKWQP DNFLIDEDSN WMLQSWKGRI LSGCTIWVPA K

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0220789.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505853.1	3e-90	scarecrow-like protein 34
Refseq	XP_020214944.1	2e-90	scarecrow-like protein 31 isoform X2
Refseq	XP_029127112.1	1e-90	scarecrow-like protein 14 isoform X3
Swissprot	Q9XE58	1e-69	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1S2YJS7	6e-89	A0A1S2YJS7_CICAR; scarecrow-like protein 34
STRING	XP_004505853.1	1e-89	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14801	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	6e-72	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]