PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0221649.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 149aa    MW: 16774.1 Da    PI: 4.8067
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0221649.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.3e-121256345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++ 
  Lj0g3v0221649.2 12 EWSREQDKAFENALATYPEDdsdRWEKIAADVP-GKTLEEIKHHYE 56
                     7********************************.**********96 PP
2Myb_DNA-binding26.21.8e-08123149329
                      SS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIar 29 
                      +WT+eE+ l++ +  ++G+g+W++I+r
  Lj0g3v0221649.2 123 AWTEEEHRLFLLGLDKYGKGDWRSISR 149
                      6************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.704863IPR017884SANT domain
SMARTSM007171.8E-10961IPR001005SANT/Myb domain
SuperFamilySSF466894.59E-121167IPR009057Homeodomain-like
CDDcd001673.41E-91259No hitNo description
PfamPF002491.7E-91256IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-61256IPR009057Homeodomain-like
PROSITE profilePS5129412.693115149IPR017930Myb domain
SuperFamilySSF466895.17E-6118148IPR009057Homeodomain-like
PfamPF002493.8E-6123148IPR001005SANT/Myb domain
CDDcd001675.26E-6123149No hitNo description
Gene3DG3DSA:1.10.10.601.1E-6123149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MTVDEVGSSS SEWSREQDKA FENALATYPE DDSDRWEKIA ADVPGKTLEE IKHHYELLVD  60
DVNQIDSGCV PVPSYNSFSE GSRSHASDEG AGKKGGHPWN YNSESNHGTK ASRSDQERRK  120
GIAWTEEEHR LFLLGLDKYG KGDWRSISR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-19977775RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.10220.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0221649.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1462410.0BT146241.1 Lotus japonicus clone JCVI-FLLj-3K12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532025.14e-92transcription factor SRM1
RefseqXP_006585964.14e-92transcription factor SRM1
RefseqXP_025985536.14e-92transcription factor SRM1
RefseqXP_025985537.14e-92transcription factor SRM1
RefseqXP_028245644.14e-92transcription factor SRM1-like
RefseqXP_028245645.14e-92transcription factor SRM1-like
RefseqXP_028245646.14e-92transcription factor SRM1-like
SwissprotQ9FNN65e-61SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A445JLL29e-91A0A445JLL2_GLYSO; Transcription factor SRM1 isoform A
TrEMBLK7L9L39e-91K7L9L3_SOYBN; Uncharacterized protein
STRINGGLYMA08G40020.51e-91(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-63MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]