PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0224509.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

FAR1

Protein Properties

Length: 150aa MW: 17348.5 Da PI: 8.4847

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0224509.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.8	8.2e-14	88	150	2	66
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 +n Y+ ++GF+vrk++ +k+ ++g i + ++vCskeg r+++k++ + ++r etrt+C a++ Lj0g3v0224509.1 88 LWNGYGGKIGFNVRKQYFNKN-KDGMILTIRYVCSKEGIRKPDKRD-CVTTKHRLETRTNCPARI 150 799************9998.8888**************99.899999*******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-10	88	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MDADEQLESS TTAKDADEHR TSPTVIMDTD EHLKSLTTAK DDRHHISITK DTRMSNDFVA 60 AQRTSNKDDE WKPQVGLLFN TLEETWKLWN GYGGKIGFNV RKQYFNKNKD GMILTIRYVC 120 SKEGIRKPDK RDCVTTKHRL ETRTNCPARI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.9112	1e-152	floral bud\| pod\| protoplast

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0224509.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT139659	0.0	BT139659.1 Lotus japonicus clone JCVI-FLLj-7I10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024642355.1	4e-32	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	I3SGR2	1e-106	I3SGR2_LOTJA; Uncharacterized protein
STRING	AES79799	5e-25	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-11	FAR1 family protein