PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0224609.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 157aa    MW: 18117.9 Da    PI: 9.3526
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0224609.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer65.69.6e-212073255
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55
                     ++v+YkeC++Nh asl   ++DGC+Ef+++  e++t++a+ C  CgCH nFH +
  Lj0g3v0224609.1 20 QEVVYKECKRNHSASLNRVSYDGCQEFLKAGVESNTKDAMLCVVCGCHQNFHVQ 73
                     6899**************************666699****************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-102271IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-182273IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.0E-162471IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152319.2472474IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.2E-1782153IPR009057Homeodomain-like
SuperFamilySSF466899.21E-1385151IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-1892148IPR006455Homeodomain, ZF-HD class
CDDcd000860.0029693155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSQETMSDTE INFPPPGFDQ EVVYKECKRN HSASLNRVSY DGCQEFLKAG VESNTKDAML  60
CVVCGCHQNF HVQVRLNGET NPKKEMMSVP PKRKKRTVFT PISKNRMKEF AERIGWKLTT  120
GKKEEIDHLC LEIGISLKTF SVWLNNHRPR AIKMEKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0224609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338063.14e-42zinc-finger homeodomain protein 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15282511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42780.12e-22homeobox protein 27