PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0226419.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 90aa    MW: 10688.4 Da    PI: 4.5838
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0226419.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-08242445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     WT+eE + l d+++++  + +  Ia +++  Rt +++k+r++
  Lj0g3v0226419.1  2 WTKEETDELFDLCERFDLR-FIVIADRFPSSRTVEELKDRYY 42
                     *******************.*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.098149IPR017884SANT domain
SuperFamilySSF466891.4E-6143IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-6243IPR009057Homeodomain-like
PfamPF162826.2E-18243IPR032563DAMP1, SANT/Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MWTKEETDEL FDLCERFDLR FIVIADRFPS SRTVEELKDR YYSGTSLFNK LLYVALCYSF  60
SLIHALCLID YMETAQAKMF IFDHIPLSVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.72982e-66floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0226419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1354652e-47AC135465.23 Medicago truncatula clone mth2-24h22, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49752330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.12e-22MYB_related family protein