PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0229569.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 122aa    MW: 13707.2 Da    PI: 8.0715
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0229569.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer772.6e-243074449
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCH 49
                     + YkeClkNhAa++Gg+a+DGC+Efmp+ g+egt +alkC+AC+CH
  Lj0g3v0229569.1 30 ISYKECLKNHAAAIGGNATDGCCEFMPA-GDEGTLDALKCSACNCH 74
                     68*************************9.999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-163074IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-213074IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.4E-213274IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.6033281IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MNSHTFVEAS KDMECSDFHV DKSLEKKIII SYKECLKNHA AAIGGNATDG CCEFMPAGDE  60
GTLDALKCSA CNCHXXXXXX XHSFPFWLIH LSTKVGQLVL LINLMRRTVT MGLRGWKIQR  120
KM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0229569.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555538.14e-30zinc-finger homeodomain protein 4
RefseqXP_028219678.14e-30zinc-finger homeodomain protein 4-like
TrEMBLA0A371HZK33e-25A0A371HZK3_MUCPR; Zinc-finger homeodomain protein 4 (Fragment)
STRINGXP_004495441.12e-25(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-23homeobox protein 31