PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0229739.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 258aa    MW: 28162.5 Da    PI: 7.0579
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0229739.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer956.2e-3055107457
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                       +Y+eClkNhA+ +Gg+a+DGC Efm++ g egt++alkCaAC+CHRnFHR++ 
  Lj0g3v0229739.1  55 GKYRECLKNHAVGMGGYALDGCLEFMAA-GPEGTIDALKCAACDCHRNFHRKDA 107
                      68*************************9.999********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257749.0E-2151107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.7E-2756106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2756106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.04857106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.7E-32182257IPR009057Homeodomain-like
SuperFamilySSF466896.58E-21183256IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27196251IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDYDEQEEEL VMAGGGGASY DDDDSSLANP TRVKMPSPVD DPAAMMVVVR NTGKGKYREC  60
LKNHAVGMGG YALDGCLEFM AAGPEGTIDA LKCAACDCHR NFHRKDAAAF PGDHPYHPFH  120
HRRHQPPPGQ PQYAACYRAT PAGYLHVAGP NRGSGAATLA LPIGGGPQGA RELMDHDDVS  180
DRSGGGGEGS NSRAGKRFRT KFTHEQKEKM LEFAESAGWR IQRHDDNVVE EFCNEIGVKR  240
HVLKVWMHNN KHTLGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-261962531875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0229739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348112.12e-97zinc-finger homeodomain protein 2-like
SwissprotA2Z2593e-65ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH53e-65ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0S3R2K21e-92A0A0S3R2K2_PHAAN; Uncharacterized protein
STRINGGLYMA02G04550.27e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-55homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]