PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0233949.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 222aa    MW: 23841.4 Da    PI: 8.7894
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0233949.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-382080262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     ++++lkcprCds ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGgg+rk  k+s
  Lj0g3v0233949.1 20 EQQQLKCPRCDSINTKFCYYNNYNLSQPRHYCKNCKRYWTKGGSLRNIPVGGGSRKTTKRS 80
                     7899****************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-251372IPR003851Zinc finger, Dof-type
PfamPF027011.1E-322278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6582478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQDPTAAFQQ PMKPQFPEQE QQQLKCPRCD SINTKFCYYN NYNLSQPRHY CKNCKRYWTK  60
GGSLRNIPVG GGSRKTTKRS SSTSKRSSSS SSSPSPSISS ATNPAATVSE PTRVHTDPVG  120
GGSLSFSSLL ASNGHFGSLF EGMNSSMSGL KMVKMGEFGE NVMGSDPVVK PGSGSDPELE  180
MQSNGSSECF LGMRNGDSSS WNNGGGYGWS DLAMYTPGSS FQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.141360.0cell culture| flower| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0233949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572528e-49DQ857252.1 Glycine max Dof1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336749.12e-94dof zinc finger protein DOF3.1-like
SwissprotO821552e-42DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A0B5JL376e-87A0A0B5JL37_CAJCA; Dof protein
STRINGXP_007150543.17e-86(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-35DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]