PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0244439.1
Common NameLjWRKY30
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 237aa    MW: 26907.8 Da    PI: 4.8757
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0244439.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.72.4e-282081159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                     ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC+++k+v++s++dp++ ei Y+g+H+++
  Lj0g3v0244439.1 20 LDDGYSWRKYGQKDILGAKFPRGYYRCTHRnvqGCQATKQVQKSDKDPTMYEINYRGKHTCT 81
                     59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-281482IPR003657WRKY domain
PROSITE profilePS5081122.321578IPR003657WRKY domain
SuperFamilySSF1182905.62E-251982IPR003657WRKY domain
SMARTSM007741.3E-382082IPR003657WRKY domain
PfamPF031062.3E-262180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MPKWTSQVRV CSGTAIEGSL DDGYSWRKYG QKDILGAKFP RGYYRCTHRN VQGCQATKQV  60
QKSDKDPTMY EINYRGKHTC TQASHANKAS PSTKVKVGLG ENKHHILTHQ KNQPQQEKTE  120
QTQERVLSFG SELELKIEDL DYKEDTFPSF CFSSPSIGSE QEDNNIFSEN NFIESFSPPY  180
ISPATSELVL HTSDFDVTEI ISTPTSVTNY EMIDLDLFLD NMDFDTVFPI NTTELCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-2019781374Disease resistance protein RRS1
5w3x_D4e-2019781374Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.81060.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0244439.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3786400.0AB378640.1 Lotus japonicus LjWRKY30 mRNA for transcription factor WRKY, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335908.11e-116probable WRKY transcription factor 53
TrEMBLB3IX401e-178B3IX40_LOTJA; Transcription factor WRKY
STRINGXP_007135232.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-41WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Asamizu E,Shimoda Y,Kouchi H,Tabata S,Sato S
    A positive regulatory role for LjERF1 in the nodulation process is revealed by systematic analysis of nodule-associated transcription factors of Lotus japonicus.
    Plant Physiol., 2008. 147(4): p. 2030-40
    [PMID:18567832]