PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0249079.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 255aa    MW: 28853 Da    PI: 9.9162
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0249079.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.11.6e-093445090
             FAR1 50 kerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                     k r++ +++rt+Cka+l+v+k + +++w + +++++HnH ++
  Lj0g3v0249079.1  3 KVRKRCSTSRTDCKASLVVSKARkRHNWAIVSFNNDHNHIMV 44
                     456777899***********99989**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-7344IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MKKVRKRCST SRTDCKASLV VSKARKRHNW AIVSFNNDHN HIMVSPKSVK YLRCHKEGMS  60
VAAKNLVEKF HQDGLPTGKV ATMFNNGSSS FSKRDCWNHL RNVRSRKLEV GDANKNVGFV  120
GGETNLVSER DDLATLRGMH VHRLLMSLAD LAAKSEKIDK FISSQLEEIY KKASMMVSEM  180
QSSKDILLSE TSCQGFIMDE QVNEEPELNI KDPIMSQTRR TKSSLELSMN RPSVNKDHAK  240
YVENMDTIDE VASKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0249079.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3L1D47e-46A0A2K3L1D4_TRIPR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1579835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-11FAR1-related sequence 5