PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0250259.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 524aa    MW: 58631.9 Da    PI: 7.1815
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0250259.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.4e-187703398
                     -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +++l+ +d+ g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v+v+r
  Lj0g3v0250259.1  7 TQELVAKDLLGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGENGELRVGVRR 70
                     45899**********************************************..449999*****98 PP
2Auxin_resp981.4e-3296177183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t++ F v+Y+Pr+  s+F+++v+k+++a+++k+s+GmR+km+fe +d+se  +r+sGt+vgv+d++p +W nSkWrsLk
  Lj0g3v0250259.1  96 ASHAVATQTLFVVYYKPRT--SQFIISVNKYLEAMNNKFSLGMRLKMRFEADDASEtdKRFSGTIVGVEDISP-HWVNSKWRSLK 177
                      789***************6..9********************************9833567**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-24185IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0045172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492172IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-21299IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-15670IPR003340B3 DNA binding domain
CDDcd100171.09E-13870No hitNo description
PfamPF065072.3E-3096177IPR010525Auxin response factor
PfamPF023091.4E-7275449IPR033389AUX/IAA domain
PROSITE profilePS5174526.411413494IPR000270PB1 domain
SuperFamilySSF542775.89E-13414489No hitNo description
PfamPF023098.0E-7456497IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSQQTPTQEL VAKDLLGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDTFVFLRGE  60
NGELRVGVRR LARQPSSMPS SVISSQSMHL GVLATASHAV ATQTLFVVYY KPRTSQFIIS  120
VNKYLEAMNN KFSLGMRLKM RFEADDASET DKRFSGTIVG VEDISPHWVN SKWRSLKVQW  180
DEPAAVTRPD RVSPWEIEPF VASASTPSVQ PTVVKTKRPR QPSEIPDVDT TSAASAFWDA  240
GMKHADMTQL GVLSESKRSD VSGMWHHKQT DMNSKTNSNT MSRNQTEASW LSSPHSSYPS  300
HLVQDTTDDS KSVCRMNIDY VLDQVDKESK VETATSYRLF GIDLIDHSRN SAAAENASPH  360
VVNVPRAEVC ATASTLSKTD SGSKSDISKA SERKQEQQQG PQKETQSKQI CGRSRTKVQM  420
QGVAVGRAVD LNTLDGYDQL IDELEQLFDL KGQLQHRNKW EIVFTDDEGD MMLVGDDPWP  480
EFCNMVKRIF ICSSQDVKKM SSGSKLPISS MEEGTVISSE TTET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A8e-951200155355Auxin response factor 1
4ldx_B8e-951200155355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.168910.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0250259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150376e-61AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220654.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0B2Q8V00.0A0A0B2Q8V0_GLYSO; Auxin response factor
TrEMBLA0A445L8B30.0A0A445L8B3_GLYSO; Auxin response factor
STRINGGLYMA03G17450.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.11e-175auxin response factor 9