PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0250259.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARF
Protein Properties Length: 683aa    MW: 75999.6 Da    PI: 6.4266
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0250259.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23129229198
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d+ g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + ++
  Lj0g3v0250259.2 129 FCKVLTASDTSTHGGFSVLRKHATEClpaldMSQQTPTQELVAKDLLGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGEN 220
                      99****************************9555556679************************************************..4499 PP

                      E..EEEEE- CS
               B3  90 felvvkvfr 98 
                      +el+v+v+r
  Lj0g3v0250259.2 221 GELRVGVRR 229
                      99*****98 PP
2Auxin_resp97.42.1e-32255336183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t++ F v+Y+Pr+  s+F+++v+k+++a+++k+s+GmR+km+fe +d+se  +r+sGt+vgv+d++p +W nSkWrsLk
  Lj0g3v0250259.2 255 ASHAVATQTLFVVYYKPRT--SQFIISVNKYLEAMNNKFSLGMRLKMRFEADDASEtdKRFSGTIVGVEDISP-HWVNSKWRSLK 336
                      789***************6..9********************************9833567**********99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-39120258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-40121244IPR015300DNA-binding pseudobarrel domain
CDDcd100177.36E-20127229No hitNo description
SMARTSM010193.3E-20129231IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956129231IPR003340B3 DNA binding domain
PfamPF023621.9E-21129229IPR003340B3 DNA binding domain
PfamPF065073.4E-30255336IPR010525Auxin response factor
PfamPF023092.1E-7435608IPR033389AUX/IAA domain
PROSITE profilePS5174526.411572653IPR000270PB1 domain
SuperFamilySSF542778.63E-13573648No hitNo description
PfamPF023091.1E-6615656IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MMMMNRGSNV SAEVGGSGGS GDELYEPLWK LSAGPLVDVP RVGQRVFYFP QGHMEQLEAS  60
TNQELNQRIP LLKLPTKILC RVVNVHLMAE QETDEVYAQI TLVPESNQDE PTSPDPCPAE  120
PPKPTVHSFC KVLTASDTST HGGFSVLRKH ATECLPALDM SQQTPTQELV AKDLLGYEWR  180
FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DTFVFLRGEN GELRVGVRRL ARQPSSMPSS  240
VISSQSMHLG VLATASHAVA TQTLFVVYYK PRTSQFIISV NKYLEAMNNK FSLGMRLKMR  300
FEADDASETD KRFSGTIVGV EDISPHWVNS KWRSLKVQWD EPAAVTRPDR VSPWEIEPFV  360
ASASTPSVQP TVVKTKRPRQ PSEIPDVDTT SAASAFWDAG MKHADMTQLG VLSESKRSDV  420
SGMWHHKQTD MNSKTNSNTM SRNQTEASWL SSPHSSYPSH LVQDTTDDSK SVCRMNIDYV  480
LDQVDKESKV ETATSYRLFG IDLIDHSRNS AAAENASPHV VNVPRAEVCA TASTLSKTDS  540
GSKSDISKAS ERKQEQQQGP QKETQSKQIC GRSRTKVQMQ GVAVGRAVDL NTLDGYDQLI  600
DELEQLFDLK GQLQHRNKWE IVFTDDEGDM MLVGDDPWPE FCNMVKRIFI CSSQDVKKMS  660
SGSKLPISSM EEGTVISSET TET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-168153599355Auxin response factor 1
4ldw_A1e-168153599355Auxin response factor 1
4ldw_B1e-168153599355Auxin response factor 1
4ldx_A1e-168153599355Auxin response factor 1
4ldx_B1e-168153599355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.168910.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0250259.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150378e-61AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220654.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A445L8M20.0A0A445L8M2_GLYSO; Auxin response factor
TrEMBLI1JM140.0I1JM14_SOYBN; Auxin response factor
STRINGGLYMA03G17450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9