PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0250539.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 249aa    MW: 27586.5 Da    PI: 7.0192
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0250539.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-1993143255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++ eIrdp++ng  +r++lg++ t+eeAa a+++a+ k++g
  Lj0g3v0250539.1  93 RYRGVRRRP-WGKFAGEIRDPKKNG--ARVWLGTYETEEEAALAYDKAAFKMRG 143
                      8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.24E-3292153No hitNo description
SMARTSM003803.4E-3793157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3193152IPR001471AP2/ERF domain
PROSITE profilePS5103224.5493151IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2293152IPR016177DNA-binding domain
PfamPF008471.5E-1393143IPR001471AP2/ERF domain
PRINTSPR003672.2E-1394105IPR001471AP2/ERF domain
PRINTSPR003672.2E-13133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSCDFSSLES IQNFLLLELE HDNSHVDWNP SNNETCYSPS YNQFPIPNFQ SSGSSQAVTN  60
LDSVVGPVKK SPGCKKGSSA AARESNAPPV WKRYRGVRRR PWGKFAGEIR DPKKNGARVW  120
LGTYETEEEA ALAYDKAAFK MRGRKAKLNF PHLIGSDSLS ESESMSEVTF LRQNSPDHLS  180
PASSSASEDS SECSPGSKKR KNLVGVLNRL AKHRSQVQVF DMGSTTNDDV NVDEWWDNLS  240
SDSGVIWCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-3092151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.124590.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0250539.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236246.25e-81DNA-binding domain-containing protein
TrEMBLA0A140WWF37e-96A0A140WWF3_LOTCO; AP2/ERF
STRINGGLYMA03G26520.12e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-28ethylene-responsive element binding factor 13