PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0252679.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 96aa MW: 10314.4 Da PI: 8.332

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0252679.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	61	2.3e-19	63	96	2	35
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCka 35 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+ Lj0g3v0252679.1 63 ENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKT 96 57899***************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-12	63	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-15	65	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	18.007	67	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MIQELLDGGA SLIAGERKSS NNPVGGVLLP SPPSQTPSST TTTHTTTSTP TTTTVTATTT 60 ASENQNLRCP RCDSSNTKFC YYNNYNLTQP RHFCKT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0252679.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020238611.1	5e-29	dof zinc finger protein DOF1.1
Swissprot	Q9LSL6	2e-16	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A0K8K5W4	1e-27	A0A0K8K5W4_CAJCA; Dof protein
STRING	GLYMA01G38970.1	7e-24	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-17	DOF zinc finger protein 1

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]