PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0253159.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 450aa    MW: 51710.2 Da    PI: 10.3323
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0253159.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.6e-15141071100
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ffk+ t+ +  + g l+lp+ f++ehgg+  ++  + l+ ++ + W++    +k+ ++ ++++kGWkeF++   L+ g  ++F+++++s+f   
  Lj0g3v0253159.1  14 FFKIITTRSLEA-GKLMLPNGFTREHGGDVSNP--VFLKPPDDKDWKIHW--TKHEDGyIWFEKGWKEFASYYSLDHGYLLLFEYNKHSDF--G 100
                      788886666555.56***********9996665..***************..888888799************************999999..9 PP

                      EEEE-SS CS
               B3  94 vkvfrks 100
                      v++f+ks
  Lj0g3v0253159.1 101 VHIFDKS 107
                      9999985 PP
2B362.95.1e-20237322598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +p++++k   +++  +fae+h ++k++  +++l  ++gr+W vk+  +k+     +++GWk+Fv++n+Lk+gD++vF+l++++  +l+v++f 
  Lj0g3v0253159.1 237 IKPAYANK--YIRVTSEFAEKHLKNKRG--EIILHVKDGRTWPVKYVLEKGT----ISAGWKKFVSDNNLKVGDVCVFELTKSQPLSLKVSIFP 322
                      33333333..47888*******777665..7***************777775....99**********************99999999999985 PP
3B341.91.8e-133694451696
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                        +pk f+++h ++k ++  l++e+   + W v l +  k+g   l+kGW +F+++ +L +gD++vF+l++++e  +v++v
  Lj0g3v0253159.1 369 QDVPKAFVRKHLKNK-KHLRLRFEN---KFWPVGLYHLPKRGVGKLSKGWARFARESKLLVGDVCVFELINKEEDAPVFHV 445
                      568********5443.444566666...9******8888888899************************987666676665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-1911107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-1913107IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-1213105No hitNo description
PROSITE profilePS5086312.5213107IPR003340B3 DNA binding domain
SMARTSM010191.1E-1214107IPR003340B3 DNA binding domain
PfamPF023624.2E-1214106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-25226322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-23226323IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.38231324IPR003340B3 DNA binding domain
CDDcd100171.18E-19231322No hitNo description
SMARTSM010191.4E-18233324IPR003340B3 DNA binding domain
PfamPF023624.2E-17240321IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-19347449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-16348449IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-15353449No hitNo description
SMARTSM010192.9E-7354449IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941354450IPR003340B3 DNA binding domain
PfamPF023629.3E-12369445IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MTCNKRDKHS AIRFFKIITT RSLEAGKLML PNGFTREHGG DVSNPVFLKP PDDKDWKIHW  60
TKHEDGYIWF EKGWKEFASY YSLDHGYLLL FEYNKHSDFG VHIFDKSTLE IEYPFQGYKD  120
EPDNLGQINA DLVQSLDERT SCKKRKLKSP MSSSQPSKKL RPSTSGDVGR RSKSPKLPQH  180
VKGHHQSQGT EFEELDENVS GDSLECLKWK ELTSKITKAS NRARTITSKN PSFKVVIKPA  240
YANKYIRVTS EFAEKHLKNK RGEIILHVKD GRTWPVKYVL EKGTISAGWK KFVSDNNLKV  300
GDVCVFELTK SQPLSLKVSI FPPGGESDQP HSPPSLGRKA TQKRADAFTP KNPYFTANIK  360
PNKWGDYRQD VPKAFVRKHL KNKKHLRLRF ENKFWPVGLY HLPKRGVGKL SKGWARFARE  420
SKLLVGDVCV FELINKEEDA PVFHVHIFKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1521832134140B3 domain-containing transcription factor VRN1
4i1k_B3e-1521832134140B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0253159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-34B3 family protein