PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0259819.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family E2F/DP
Protein Properties Length: 218aa    MW: 24384.2 Da    PI: 5.9293
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0259819.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP88.64.5e-2892174271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Lj0g3v0259819.1  92 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnstlspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 174
                      689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.0E-864218IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.8E-4787179IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-3591174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.2E-2593174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.08E-2294175IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440742.14E-8180218No hitNo description
PfamPF087813.0E-7182218IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGTQPQQTCP EEEEEELPGR GVTFSGQSMS TSRSVGSPSS RSEQTMATPA SESTFLRLNH  60
LDIHGGDDVG TQGAVGSNKK KRGQRAVGGD KSGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEFADPS NSTLSPDQQQ YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWKGLPRTSL  180
NDIEELKTER LGLRNRIEKK RAYLQELEDQ YIGLQNLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-4185179193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.99110.0cell culture| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0259819.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517526.11e-136transcription factor-like protein DPB
RefseqXP_028248476.11e-136transcription factor-like protein DPB
SwissprotQ9FNY21e-105DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A445M7021e-135A0A445M702_GLYSO; Transcription factor-like protein DPB isoform A
TrEMBLI1JAG81e-135I1JAG8_SOYBN; Uncharacterized protein
STRINGGLYMA01G43800.11e-136(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.16e-97Transcription factor DP