PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0261659.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 279aa    MW: 32337.4 Da    PI: 6.8806
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0261659.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.11.7e-09207228526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C ++ ++G Ck+G++C F H+
  Lj0g3v0261659.1 207 DCEYYVKNGRCKFGSSCLFKHP 228
                      7********************8 PP
2zf-CCCH29.41.4e-09237259325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      te+C++++r+G Cky   C+++H
  Lj0g3v0261659.1 237 TEICKNYQRFGVCKYRKACRYIH 259
                      9********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-6201231IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-4202229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136203230IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-7207228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5208231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235234262IPR000571Zinc finger, CCCH-type
SMARTSM003560.0029234261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6236261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-6237261IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5237259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKEKLLFIWD GSHCTTTTFD LPTQHNKKIV FKDLNKVWDE YANLMLKTLC WLTILHIRHC  60
LILHTTFFLH TCKSWKRDDN SLGEGGQLMM FLDELVNVVD VREYVKTISF GQPNINEQDK  120
YWGCYKNVVY EVMNKTGAEE SSESKSAAEV SNGEDPQQQQ LGFEPSTLAH SQWSDLNHAT  180
EDTLDDGSKN VNEEKRSGRT PHYPLTDCEY YVKNGRCKFG SSCLFKHPIK ENPGEPTEIC  240
KNYQRFGVCK YRKACRYIHT RGKSSERSLN NMSVEENYS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0261659.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-09C3H family protein