PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0262869.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 220aa    MW: 24260.1 Da    PI: 6.2129
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0262869.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.92.9e-377103196
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkCa+dCv+apyf  +q + +fa+vhk++Gasnv++ll++lp + r+da+ ++ yeA ar++dP+yG+v++i +l+qq+++l++e
  Lj0g3v0262869.1   7 SCGACKFLRRKCASDCVFAPYFSYDQaATHFAAVHKVYGASNVSRLLSHLPIQSRSDAAITISYEALARMQDPIYGCVAHIYALHQQIASLQEE 100
                      6***********************99789****************************************************************9 PP

           DUF260  94 lal 96 
                      ++ 
  Lj0g3v0262869.1 101 IDN 103
                      875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.796108IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-367103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTGPGSSCGA CKFLRRKCAS DCVFAPYFSY DQAATHFAAV HKVYGASNVS RLLSHLPIQS  60
RSDAAITISY EALARMQDPI YGCVAHIYAL HQQIASLQEE IDNLLGSQIA NSFVSSVDCG  120
GVQVPVNLNS EIQYLLQHDH ATIRTPYHQN QLANFLSSQE GSASVVYQSV NSQMETELPP  180
NAHALQEPLF GDFNSNPFEK FLSGIDQEVF VHHPWFKHNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3331027105LOB family transfactor Ramosa2.1
5ly0_B1e-3331027105LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0262869.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368497.11e-111LOB domain-containing protein 33-like
SwissprotQ9LHS81e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A371ED151e-114A0A371ED15_MUCPR; LOB domain-containing protein 33 (Fragment)
STRINGGLYMA02G41710.21e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.15e-57LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]