PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0268999.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 551aa    MW: 61708.5 Da    PI: 6.5107
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0268999.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.12.5e-1261815501373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+  A+a+s+++++  ++l+ + +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l++++l+++++P+lkf+
  Lj0g3v0268999.1 181 LKQLLIVSAKALSENKMKDFDHLIGKARSCVSISGEPIQRLGAYLVEGLVARKEASGNNIYHALRCREPE---GKDLLSYMQLLYDMCPYLKFG 271
                      5799*****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +++aN aI ea  +e+++HiiDf+i qG+QW +LlqaL +Rp+g+p++RiTg+++p s   + + le +++rLa + e++ +p+ef+  v    
  Lj0g3v0268999.1 272 YMAANGAIAEACRNEDQIHIIDFQICQGTQWTTLLQALGARPGGAPHVRITGIDDPVSRyaRGDGLEVVAKRLALISEKFSIPVEFHG-VPVFS 364
                      ********************************************************999999**************************.67788 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       d++ ++L+v+pgEalaVn+ lqlh++ desv+++++rd +L++vkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+sl+++lpr+s+
  Lj0g3v0268999.1 365 PDVTRDMLDVRPGEALAVNFPLQLHHTADESVDVSNPRDGLLRMVKSLSPKVVTLVEQESNTNTTPFFNRFVETLDYYLAMFESLDVSLPRNSK 458
                      99******************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      eri+vE+++l+r+ivn+vaceg+er+erhe ++kW++r+++aGF+++pls+++++ +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  Lj0g3v0268999.1 459 ERINVEQHCLARDIVNIVACEGKERVERHELFGKWKSRFTMAGFHQYPLSSYVNSVIRSLLRCYS-EHYSLVEKDGAMLLGWKNRNLISASAW 550
                      *************************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.01155532IPR005202Transcription factor GRAS
PfamPF035148.8E-124181550IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MDSKQFLNFD VTSSGGIPRT SSYPTVSPIP NRLLGSLKID TGNSPISSLS TQFDSDTLSA  60
LSDSQETLSG ASPSCDSLQE SNHHFHRSFL PQNACWDQET RHRLLELETR LMEHDGDDEV  120
TTSKTPFGES SRPTTSGQRN RPWSQEGQGS EYTQSEVKRV EKRHKSMEVE TSAQGFPTSN  180
LKQLLIVSAK ALSENKMKDF DHLIGKARSC VSISGEPIQR LGAYLVEGLV ARKEASGNNI  240
YHALRCREPE GKDLLSYMQL LYDMCPYLKF GYMAANGAIA EACRNEDQIH IIDFQICQGT  300
QWTTLLQALG ARPGGAPHVR ITGIDDPVSR YARGDGLEVV AKRLALISEK FSIPVEFHGV  360
PVFSPDVTRD MLDVRPGEAL AVNFPLQLHH TADESVDVSN PRDGLLRMVK SLSPKVVTLV  420
EQESNTNTTP FFNRFVETLD YYLAMFESLD VSLPRNSKER INVEQHCLAR DIVNIVACEG  480
KERVERHELF GKWKSRFTMA GFHQYPLSSY VNSVIRSLLR CYSEHYSLVE KDGAMLLGWK  540
NRNLISASAW H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-6120455126375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157164KRVEKRHK
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0268999.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028237900.10.0scarecrow-like protein 21
RefseqXP_028237901.10.0scarecrow-like protein 21
RefseqXP_028237902.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A445KEP30.0A0A445KEP3_GLYSO; Chitin-inducible gibberellin-responsive protein 1 isoform A
STRINGGLYMA06G41500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-171GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]