PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0271989.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24404.1 Da    PI: 5.3378
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0271989.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.62.7e-071222142
                     HHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF 21 lKKAeELSvLCdaevaviifss 42
                     +KK  EL +LC++e++ ii+s+
  Lj0g3v0271989.1  1 MKKVDELTTLCGIEACAIIYSP 22
                     8*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.3E-5122IPR002100Transcription factor, MADS-box
CDDcd002665.96E-17157No hitNo description
SuperFamilySSF554559.55E-12166IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKKVDELTTL CGIEACAIIY SPFDPQPEVW PSQWGVQNVL ERLKTMPELE QSKKMMNQET  60
FLKQMILKAK DQMAKQKKEN REKEMNLHMF RCINAGKVLP NMTTNDLNDL AWVIDHNLKE  120
VDRMLEKMNN TVIHQGRSSI LAAPSPIQPQ MAPALTVAKT EEMTLVDDVH GLAMNNADAI  180
QRQWYVDLIN GNYGNETMTF GDANPQNGSF WPNP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0271989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019428473.12e-79PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A371I5P73e-69A0A371I5P7_MUCPR; Agamous-like MADS-box protein AGL80 (Fragment)
STRINGXP_007163366.17e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-43AGAMOUS-like 80