PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0274819.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 206aa    MW: 22364.2 Da    PI: 10.6338
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0274819.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.62.7e-4172148278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC++dls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  Lj0g3v0274819.3  72 CLVDGCSSDLSNCRDYHRRHKVCELHSKTPEVTIGGMKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQP 148
                      9*************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.59969146IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.6E-3269133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-3970151IPR004333Transcription factor, SBP-box
PfamPF031109.0E-3172145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEDSSRIGVH RMKGVFSVDL KLGQVGNSST EPALPKSKDA AAAEVSKMGS SFPSGSSKRA  60
RAVNNATLTA FCLVDGCSSD LSNCRDYHRR HKVCELHSKT PEVTIGGMKQ RFCQQCSRFH  120
SLDQFDERKR SCRKRLDGHN RRRRKPQPEP LKGPGSFLSS YQGSQLLPFS SSTAMVNPGW  180
SGGLFTSNAG GRLSQPQPAP TSGAFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29711451084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127144RKRSCRKRLDGHNRRRRK
2127145RKRSCRKRLDGHNRRRRKP
3128145KRSCRKRLDGHNRRRRKP
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Weak increase of expression during floral induction. {ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0274819.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027338408.11e-106squamosa promoter-binding-like protein 13A
SwissprotB9DI209e-58SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI119e-58SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLA0A371EDC31e-105A0A371EDC3_MUCPR; Squamosa promoter-binding-like protein 13B (Fragment)
STRINGGLYMA04G37391.11e-103(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-60SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]