PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0274869.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 83aa    MW: 9117.54 Da    PI: 10.2637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0274869.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY642.6e-201461459
                     --TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 14 evkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                     +vkg+++pr+YYrCtsagCp++k++e++ +d + v+itY+g H+h+
  Lj0g3v0274869.1  1 MVKGKPHPRNYYRCTSAGCPARKHIETAVDDSNDVIITYKGVHDHD 46
                     59*******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-19148IPR003657WRKY domain
SMARTSM007747.2E-14147IPR003657WRKY domain
PROSITE profilePS5081122.791148IPR003657WRKY domain
SuperFamilySSF1182904.05E-17148IPR003657WRKY domain
PfamPF031061.6E-14246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MVKGKPHPRN YYRCTSAGCP ARKHIETAVD DSNDVIITYK GVHDHDMPVP KKRHGQPNAP  60
LVAAAAPASM SKLQLMKNDS PKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-162482874WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.46541e-129cell culture| floral bud| flower| pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0274869.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102991e-113AP010299.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT02F19, TM1353, complete sequence.
GenBankAP0103001e-113AP010300.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjB04H20, BM2019, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154886.12e-40hypothetical protein PHAVU_003G156300g
SwissprotP595834e-35WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLV7CC735e-39V7CC73_PHAVU; Uncharacterized protein
STRINGXP_007154886.18e-40(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.16e-31WRKY DNA-binding protein 32