PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0277059.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 593aa    MW: 66449.2 Da    PI: 10.6178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0277059.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.1e-17115201999
                      HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++ + g + lp +f+ +h +++k+++  +    ++gr+W+  + ++k++  + l++ W+ Fv +n+Lk+gD+++F+l+ +++ ++ v++fr+
  Lj0g3v0277059.1 115 SYIR-GYMNLPPEFCLRHlDLSKPQG--VFNLLLNGRVWTAGYVIWKTK--IALSSRWRAFVTDNKLKVGDVCTFELIAKTNNTFQVHIFRE 201
                      4444.4599*********98887776..6666688********999999..67*************************9899999*****97 PP
2B362.47.2e-20294387899
                      -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++  +g+l lp +f+ +h ++ k+++  + le ++g + +vk+ +  +++++++vl++GWk Fvk+n+Lk+gD++ F+l+ +++ ++ v++fr
  Lj0g3v0277059.1 294 PSYIIHGQLNLPSNFCLRHlDLRKPRG-FINLEMLNGTVSTVKYLIkkSNTQKKIVLGRGWKAFVKDNNLKVGDVCSFELIAKTCNTFQVHIFR 386
                      45556788************7777777.79**************7744555555***************************9999999*****9 PP

                      S CS
               B3  99 k 99 
                      +
  Lj0g3v0277059.1 387 E 387
                      7 PP
3B369.83.5e-22474572499
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      +++++ + ++g + lp +f+ +h +++k+++ ++ l   +gr+W+vk+ +rk+++r   ++ ++GW+ Fvk+n+Lk+gD+++F+l+ +++ +++
  Lj0g3v0277059.1 474 IFMRPTYVTRGEMNLPARFCLQHlDLSKPKG-DINLGVVNGRVWTVKYLIRKSKRRvkiVLPSRGWRVFVKDNNLKVGDVCTFELIVSTNNTFL 566
                      456666777788************8888887.9***************999999998855556**********************97788889* PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      v++fr+
  Lj0g3v0277059.1 567 VHIFRE 572
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-2399202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-22102201IPR015300DNA-binding pseudobarrel domain
CDDcd100176.71E-21106200No hitNo description
PROSITE profilePS5086311.632106202IPR003340B3 DNA binding domain
SMARTSM010191.3E-12108202IPR003340B3 DNA binding domain
PfamPF023627.9E-15112201IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-21280388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-20282387IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.547287388IPR003340B3 DNA binding domain
CDDcd100175.15E-21288386No hitNo description
SMARTSM010191.2E-15288388IPR003340B3 DNA binding domain
PfamPF023623.0E-18291387IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-23463573IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-22465572IPR015300DNA-binding pseudobarrel domain
CDDcd100175.78E-24470571No hitNo description
PROSITE profilePS5086313.38471573IPR003340B3 DNA binding domain
SMARTSM010191.8E-19472573IPR003340B3 DNA binding domain
PfamPF023628.4E-21474572IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MNALEINYPV KTVECKRASD AKGKKPANNE NSEDYKEGRK RKANLSLEVL QPCKMETGGC  60
VKAGSAFKFR KTASPHTDKM CKGKQVITAK QVTALERASS FKICNPSFLI FMHPSYIRGY  120
MNLPPEFCLR HLDLSKPQGV FNLLLNGRVW TAGYVIWKTK IALSSRWRAF VTDNKLKVGD  180
VCTFELIAKT NNTFQVHIFR ESDNASCSTS QVSDLRAGQK REANLLSESL RPCKVGRSRC  240
ARVGNSLKLQ KGASSSTDKK CLGKEGITAK QVTALDRARS FKICNPSVLI FMYPSYIIHG  300
QLNLPSNFCL RHLDLRKPRG FINLEMLNGT VSTVKYLIKK SNTQKKIVLG RGWKAFVKDN  360
NLKVGDVCSF ELIAKTCNTF QVHIFRESDN ANCPTSQDIR GGIKRKANLS SESLQPCKVG  420
RSRCAKVGNS LKLKKGASFS TDKRCQGKQV IAAKQVTALD RASSFKTCNP SFLIFMRPTY  480
VTRGEMNLPA RFCLQHLDLS KPKGDINLGV VNGRVWTVKY LIRKSKRRVK IVLPSRGWRV  540
FVKDNNLKVG DVCTFELIVS TNNTFLVHIF RESDNANSPT SQESVKVEEL VKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12339KKPANNENSEDYKEGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0277059.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGLYMA18G30790.12e-55(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.12e-15B3 family protein