PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0277879.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 181aa MW: 20934 Da PI: 6.7711

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0277879.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	218.3	4e-67	1	181	193	374
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +L++++gEal+Vn+++qlh++ desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf+ a eyysa+fdsl+a+lpres++r++vE Lj0g3v0277879.1 1 MLNCRQGEALVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPRFIIAYEYYSAVFDSLDATLPRESQDRVNVE 94 799***************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r++l+r+ivn+vaceg++r+ r e ++kWr+r+++aGF++ p+s+++ + ++ l++++ ++ y++++e g+l +gW+d++L+++SaW+ Lj0g3v0277879.1 95 RQCLARDIVNIVACEGEDRIGRYEVAGKWRARMTMAGFNSSPMSTNVKEAIRELIKQYCDR-YKMKDEMGALHFGWEDKNLIVASAWK 181 *******************************************************66.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.412	1	162	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-64	1	181	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MLNCRQGEAL VVNFAFQLHH MRDESVSTVN ERDQLLRMVK SLNPKLVTVV EQDMNTNTSP 60 FLPRFIIAYE YYSAVFDSLD ATLPRESQDR VNVERQCLAR DIVNIVACEG EDRIGRYEVA 120 GKWRARMTMA GFNSSPMSTN VKEAIRELIK QYCDRYKMKD EMGALHFGWE DKNLIVASAW 180 K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-29	2	180	207	378	Protein SCARECROW
5b3h_A	2e-29	2	180	206	377	Protein SCARECROW
5b3h_D	2e-29	2	180	206	377	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.11318	0.0	pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0277879.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143265	0.0	BT143265.1 Lotus japonicus clone JCVI-FLLj-1K4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570632.1	1e-119	LOW QUALITY PROTEIN: scarecrow-like protein 1
Swissprot	Q9SDQ3	1e-101	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	I3SS17	1e-132	I3SS17_LOTJA; Uncharacterized protein
STRING	XP_007161385.1	1e-115	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-103	SCARECROW-like 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]