PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0277879.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 624aa    MW: 69829 Da    PI: 4.6233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0277879.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS392.83.8e-1202335502321
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL+ecA a+s+g++ +a+++++ l++++s +gdp qR+aay++e+Laarla+s++ +y+al+++e +   ss++laa+++++ev+P++kf++
  Lj0g3v0277879.2 233 KQLLYECASALSEGNKVKASSMINDLRQMVSIQGDPSQRIAAYMVEGLAARLASSGKCIYRALKCKEPP---SSDRLAAMQILFEVCPCFKFGF 323
                      589*****************************************************************9...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aI eav++e++vHiiDfdi+qG Q+++L+q+LasRp++pp++R+Tgv++pes+  s   l+++g+rL+k+Ae+lg+pfef++ va++++
  Lj0g3v0277879.2 324 IAANGAIAEAVKNEKKVHIIDFDINQGSQYITLIQTLASRPGKPPHVRLTGVDDPESVqrSVGGLNNIGQRLEKLAEALGLPFEFRA-VASTTS 416
                      ********************************************************9999999************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                       ++ ++L++++gEal+Vn+++qlh++ desvs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf+ a eyysa+fdsl+a+lpres++
  Lj0g3v0277879.2 417 LVTQSMLNCRQGEALVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPRFIIAYEYYSAVFDSLDATLPRESQD 510
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerlee 321
                      r++vEr++l+r+ivn+vaceg++r+ r e ++kW  r+ +
  Lj0g3v0277879.2 511 RVNVERQCLARDIVNIVACEGEDRIGRYEGAGKWGGRMXA 550
                      ************************************9976 PP
2GRAS64.42.4e-20550624299374
             GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      aceg++r+er e ++kWr+r+++aGF++ p+s+++ + ++ l++++ ++ y++++e g+l +gW+d++L+++SaW+
  Lj0g3v0277879.2 550 ACEGEDRIERYEVAGKWRARMTMAGFNSSPMSTNVKEAIRELIKQYCDR-YKMKDEMGALHFGWEDKNLIVASAWK 624
                      8**********************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.657206605IPR005202Transcription factor GRAS
PfamPF035141.3E-117233550IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MSLVISAELA DTSYRNAKLY TIKGTDVKPG LSSNNFVPDK HRNMYMTDSY SRESYEKYFL  60
DSPTEELTSS SSISVNSIHH DAASSYQLRA SPGASMVSDK PFDTSLMSTR NHDAYESDFV  120
SDFLDHESPD YLEVDGEMRL KLQELERALL GDNNDDEDEG EEEEEEDMFG TFQSMEIDDP  180
DIAVWADADP IQNMLLHDHD SPKESSSSDS NISSISSTTK ETSQFQNSPQ TPKQLLYECA  240
SALSEGNKVK ASSMINDLRQ MVSIQGDPSQ RIAAYMVEGL AARLASSGKC IYRALKCKEP  300
PSSDRLAAMQ ILFEVCPCFK FGFIAANGAI AEAVKNEKKV HIIDFDINQG SQYITLIQTL  360
ASRPGKPPHV RLTGVDDPES VQRSVGGLNN IGQRLEKLAE ALGLPFEFRA VASTTSLVTQ  420
SMLNCRQGEA LVVNFAFQLH HMRDESVSTV NERDQLLRMV KSLNPKLVTV VEQDMNTNTS  480
PFLPRFIIAY EYYSAVFDSL DATLPRESQD RVNVERQCLA RDIVNIVACE GEDRIGRYEG  540
AGKWGGRMXA CEGEDRIERY EVAGKWRARM TMAGFNSSPM STNVKEAIRE LIKQYCDRYK  600
MKDEMGALHF GWEDKNLIVA SAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6923862325378Protein SCARECROW
5b3h_A2e-6923862324377Protein SCARECROW
5b3h_D2e-6923862324377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.113180.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0277879.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1432650.0BT143265.1 Lotus japonicus clone JCVI-FLLj-1K4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570632.10.0LOW QUALITY PROTEIN: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K3NYM70.0A0A2K3NYM7_TRIPR; SCARECROW-like protein 1-like
STRINGGLYMA13G09220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]