PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0278949.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HB-other
Protein Properties Length: 144aa    MW: 16639.9 Da    PI: 9.996
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0278949.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37e-202179357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  Lj0g3v0278949.2 21 KYVRYTPEQVEALERLYHECPKPTSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 79
                     5679*****************************************************97 PP
2bZIP_121.84.1e-07731161861
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      rr+R++ ++e  +L+    +L+a Nk L +e+++l+k+v++l  
  Lj0g3v0278949.2  73 RRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 116
                      9***************************************9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-20476IPR009057Homeodomain-like
PROSITE profilePS5007115.5161680IPR001356Homeobox domain
SMARTSM003891.7E-151884IPR001356Homeobox domain
SuperFamilySSF466893.38E-182083IPR009057Homeodomain-like
CDDcd000869.08E-142181No hitNo description
PfamPF000462.0E-172179IPR001356Homeobox domain
CDDcd146866.38E-473112No hitNo description
Gene3DG3DSA:1.20.5.1705.1E-477114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MMAVSSGSSR DGSKVAMDNG KYVRYTPEQV EALERLYHEC PKPTSLRRQQ LIRECPILSH  60
IEPKQIKVWF QNRRCREKQR KESSRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVYENGF  120
FRQQTQNATL ATTDTSCDSG VTSG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0278949.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020217689.13e-87homeobox-leucine zipper protein ATHB-8
SwissprotQ9ZU114e-75ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A072V3X89e-87A0A072V3X8_MEDTR; Class III homeodomain leucine zipper protein
TrEMBLA0A072VD234e-86A0A072VD23_MEDTR; Class III homeodomain leucine zipper protein
TrEMBLA0A2K3PB511e-87A0A2K3PB51_TRIPR; Homeobox-leucine zipper protein ATHB-15-like
STRINGXP_009378434.18e-86(Pyrus x bretschneideri)
STRINGAES738812e-85(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.37e-78HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]