PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0279519.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 241aa    MW: 28154.3 Da    PI: 9.8155
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0279519.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.8e-16501377100
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
               B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                      +   l+ g l+lp+ f+++++g   +   + l+ +++ sWev    +k+++ ++++kGWkeFvk   L+    v+F++++ s f  +v++f+ks
  Lj0g3v0279519.1  50 TLPCLEAGELILPNGFMKKYSGGMSN--PVFLKAPDNISWEVHW--SKHDSYFWFQKGWKEFVKYYSLDHEHLVLFEFKDASHF--RVHIFDKS 137
                      666778899***********666445..5***************..*******************************9887999..*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1842137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2042137IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.60344137IPR003340B3 DNA binding domain
SMARTSM010191.6E-1245137IPR003340B3 DNA binding domain
PfamPF023621.2E-1350136IPR003340B3 DNA binding domain
CDDcd100171.16E-1359135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVWHLVLFEF KGPSKFEVRI FDKNALEIKY LPLSNKQIPN SATRFFRIIT LPCLEAGELI  60
LPNGFMKKYS GGMSNPVFLK APDNISWEVH WSKHDSYFWF QKGWKEFVKY YSLDHEHLVL  120
FEFKDASHFR VHIFDKSTLE IEYPSNENQG EEHNPDQIGD EILPPKKTKP KPPMSLSQPR  180
QKLRTGKSKG VGKSPELRKR KKVQVEDDVG GSTERATFVV ELQPYSIDRY SLRIPLHFAR  240
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197201RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0279519.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048960.0AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence.
GenBankAP0103090.0AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-16B3 family protein