PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0279669.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HD-ZIP

Protein Properties

Length: 207aa MW: 24088.2 Da PI: 7.4319

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0279669.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.2e-19	27	80	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t eql+ Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k Lj0g3v0279669.1 27 KKKRLTCEQLDSLESSFQQEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWK 80 5667999**********************************************9 PP
2	HD-ZIP_I/II	120.3	1e-38	26	117	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl+ eq+ +LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+++da+++e+++Le+ev +L+ l+ Lj0g3v0279669.1 26 EKKKRLTCEQLDSLESSFQQEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQEFDAIAKEKHKLEEEVMKLKGMLR 117 69*************************************************************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-19	15	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	22	82	IPR001356	Homeobox domain
SMART	SM00389	1.8E-16	25	86	IPR001356	Homeobox domain
CDD	cd00086	7.34E-15	27	83	No hit	No description
Pfam	PF00046	4.1E-16	27	80	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-21	29	89	IPR009057	Homeodomain-like
PRINTS	PR00031	3.1E-5	53	62	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	57	80	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.1E-5	62	78	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.7E-9	82	116	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEVKQQALSM ETPPAMEKLN YGGNQEKKKR LTCEQLDSLE SSFQQEIKLD PDRKMKLSKE 60 LGLQPRQIAV WFQNRRARWK TKQLEHLYDT LKQEFDAIAK EKHKLEEEVM KLKGMLREQG 120 CRTQQVSAGY TTEVSAEETV ESTSELALRC SKIHHHHHHH HQIHQQQQNT ANADQGNCSL 180 THTHSHMAED CSTVPVMSYW PGLPYYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	82	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0279669.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025980710.1	3e-95	putative homeobox-leucine zipper protein ATHB-51 isoform X2
Swissprot	Q9LZR0	5e-49	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A445HG20	6e-94	A0A445HG20_GLYSO; Putative homeobox-leucine zipper protein ATHB-51 isoform B
STRING	GLYMA13G21330.1	3e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	4e-48	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]