PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0280059.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 90aa MW: 10421.4 Da PI: 11.0738

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0280059.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.2	5.8e-22	34	83	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++ +++k+F +i+++Ak+++v+lT LK++CR++ I+RWPh k+ksl Lj0g3v0280059.1 34 RKLEFAEIKKHFGVKITEVAKNMNVGLTHLKKRCRELKIMRWPHKKLKSL 83 6899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.56	19	90	IPR003035	RWP-RK domain
Pfam	PF02042	3.6E-20	36	83	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MEEEEKLEKM PMPLALMLPS SSSSKVRGVK SSSRKLEFAE IKKHFGVKIT EVAKNMNVGL 60 THLKKRCREL KIMRWPHKKL KSLNSRGNWS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0280059.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT134923	1e-149	BT134923.1 Lotus japonicus clone JCVI-FLLj-5K18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019414766.1	8e-24	PREDICTED: protein RKD2-like
Swissprot	Q9LVU8	1e-15	RKD4_ARATH; Protein RKD4
TrEMBL	I3S376	9e-57	I3S376_LOTJA; Uncharacterized protein
STRING	GLYMA06G13540.2	2e-19	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-17	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]