PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0280579.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 108aa    MW: 12321.5 Da    PI: 9.7272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0280579.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-071450138
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                     rg+W + Ed ll ++++ +G g+W++ +++ g + +l 
  Lj0g3v0280579.1 14 RGPWLPREDALLTKYIRDHGEGQWRSLPKRTG-NTSLS 50
                     89************************999999.66654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-9543IPR009057Homeodomain-like
SuperFamilySSF466891.39E-6845IPR009057Homeodomain-like
PROSITE profilePS500906.144948IPR017877Myb-like domain
CDDcd001672.60E-51646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWLPR EDALLTKYIR DHGEGQWRSL PKRTGNTSLS HSLSFLIDLS  60
YSVLGLFTLL NYTCIINSFM TLFLFSLRSS VLLLFSIKNW LCDKLINL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0280579.1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-18myb domain protein 111