PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0280989.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

GRAS

Protein Properties

Length: 235aa MW: 26694.9 Da PI: 6.3509

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0280989.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	172.7	2.8e-53	1	234	129	374
GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222 +q+La R++g+p l+iT+++ p+++++ el+ t+++L+++A+e+++++e ++l+ ++l++ + + ++ Ea++Vnl + ++ +s Lj0g3v0280989.1 1 MQELALRNGGAPALKITAFVLPSHHDEMELSFTQDNLKQYASEINMSVELEILTLESLNSAS-WPQPLRDSEAVVVNLPIGSFSNC------PS 87 9*************************************************9777777764.4446799******777765......67 PP GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 + + vL++vk+l Pk+vv ++ +d+++ +F ++++ al+ ys l++sl ++++ + + +++E+ +++++ +++v +++ +et W Lj0g3v0280989.1 88 YLPLVLRFVKQLMPKIVVTLDRSCDRTDVPFPQHLIFALQSYSGLLESLdSVNV--HPDVLQMIEKYYVQPAMEKLVLGRQRL----QETTLPW 175 7889*****************************************55565..5577889**********998887....89999 PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++l ++GF+++p+s+++++qa++l+++++++g++ve+++ slvl+W+++ L+s+S Wr Lj0g3v0280989.1 176 KNMLLSSGFSALPFSNFTESQAECLVQRTPVRGFHVEKRQSSLVLCWQRKDLISISTWR 234 **********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.847	1	214	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-51	1	234	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MQELALRNGG APALKITAFV LPSHHDEMEL SFTQDNLKQY ASEINMSVEL EILTLESLNS 60 ASWPQPLRDS EAVVVNLPIG SFSNCPSYLP LVLRFVKQLM PKIVVTLDRS CDRTDVPFPQ 120 HLIFALQSYS GLLESLDSVN VHPDVLQMIE KYYVQPAMEK LVLGRQRLQE TTLPWKNMLL 180 SSGFSALPFS NFTESQAECL VQRTPVRGFH VEKRQSSLVL CWQRKDLISI STWRC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.6259	0.0	floral bud\| pod\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0280989.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020237741.1	1e-147	scarecrow-like protein 6
Refseq	XP_027928125.1	1e-147	scarecrow-like protein 27
Refseq	XP_027928126.1	1e-147	scarecrow-like protein 27
Refseq	XP_027928127.1	1e-147	scarecrow-like protein 27
Swissprot	O81316	3e-88	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A151RP96	1e-149	A0A151RP96_CAJCA; Scarecrow-like protein 6 (Fragment)
TrEMBL	A0A4D6NBW9	1e-145	A0A4D6NBW9_VIGUN; DELLA protein
STRING	GLYMA01G18040.1	1e-145	(Glycine max)
STRING	GLYMA11G17490.1	1e-145	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-90	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]