PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0288879.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 245aa    MW: 28027.8 Da    PI: 9.6326
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0288879.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.61.5e-101842323685
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3  36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      l+l+   g   + kl  +k+++ + +++GWk+F+  ng+++gD + Fk++
  Lj0g3v0288879.3 184 LKLRGHVGDDITCKL-LSKNKKDVRIGSGWKKFCTRNGVRAGDLCCFKFT 232
                      677777777778888.58888899************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-416109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-717108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-10151233IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-9161234IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-7184232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAKFKNPYYV MCNTVPPFAF AVLHQMNRNY GKIGQDVVEY LQLPDDGEFL LTNPLGVTKE  60
VSFTVVGKKA YLIIGWCELR EFYHFYGNCW FLFKHVNNLN FRFSIFDPTF AEVQYHGWPV  120
TVKQAHVDIM SQMFPAPKQP EIPMIYKNSS GSAVVFWFKN KNPSCVALPA KIVVSIRQFG  180
VSPLKLRGHV GDDITCKLLS KNKKDVRIGS GWKKFCTRNG VRAGDLCCFK FTNIAERIVE  240
VSIVF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.37870.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0288879.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-06B3 family protein