PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0290279.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 222aa    MW: 26247.9 Da    PI: 8.6929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0290279.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.3e-103461126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHg 26
                     +k ++C  ++++G  tC++G  C+F+H+
  Lj0g3v0290279.2 34 WKVAICGEYMKSGfkTCSHGTACNFIHC 61
                     899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4653363IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-43362IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-73461IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MQFLIKVFLS GIVFQQSVYG LWQVSCEFIN LTRWKVAICG EYMKSGFKTC SHGTACNFIH  60
CFRNPGGDYE WADSDKPPPK FWVRKMAALF GYSDDYEILR EQGNLSGQSY RNMSKTDSDR  120
QHSRRSQSGE MDQLNSGYSD RRKHEDERNQ RTPNEGKKRR DRTPDTDSDK EWLEEEEDRV  180
KHHRYTRKSS INKNNKRSHE EDSDVDWTTK TRGNKKQHDR EG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140159RRKHEDERNQRTPNEGKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0290279.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-47AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518349.14e-92zinc finger CCCH domain-containing protein 5 isoform X2
SwissprotQ9SY747e-45C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A1S3VJT61e-90A0A1S3VJT6_VIGRR; zinc finger CCCH domain-containing protein 5 isoform X2
STRINGXP_007148590.14e-91(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.12e-44C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]