PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0291209.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 375aa    MW: 38943.1 Da    PI: 8.6389
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0291209.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-3969129262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +++alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Lj0g3v0291209.1  69 PDTALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 129
                      57899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3153118IPR003851Zinc finger, Dof-type
PfamPF027019.7E-3371127IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.60973127IPR003851Zinc finger, Dof-type
PROSITE patternPS01361075111IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MVFTSIPAAY LDASNWQQQQ PNHQPGNNNS TSQHLLPPPP PPPLPPHGAG AIRPGSMSDR  60
ARMANVPMPD TALKCPRCES TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG  120
GCRRNKRSKG GSSSNSAGKS PASSDCQTGS GCSTNSVSSN SGPSAADILG LGPQIPPMRF  180
MAPLHHHQFS EFGAGGGGDM GLNYGLSYNP ISGGPIGGVG ELSFQIGGAN LGGGGGGSGG  240
GGGCGSILSG LDQWRSVPQT QQFPFLAGLE GSPVGLYHHP FEGGSVHHHE VIGYGSGGGH  300
SLSNLRPKIS TSGLMTQLAS VKMEDSRELN LPSQFLGTNN SASEQYWSTT TAGTNSAAWT  360
DISGFSSSST TSNQM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0291209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134031.11e-131hypothetical protein PHAVU_010G013500g
TrEMBLA0A371DYX01e-143A0A371DYX0_MUCPR; Dof zinc finger protein DOF3.6 (Fragment)
STRINGXP_007134031.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-38DNA binding with one finger 2.4