PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0292459.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family E2F/DP
Protein Properties Length: 118aa    MW: 13834.7 Da    PI: 5.0354
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0292459.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.51.5e-251741471
          E2F_TDP 14 lklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
                     +k++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Lj0g3v0292459.1  1 MKVCEKVESkGRTTYNEVADELVAEfadpsnstlspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 74
                     589****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-40179IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-20175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.7E-26174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-22174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440747.32E-980118No hitNo description
PfamPF087811.0E-782118IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MKVCEKVESK GRTTYNEVAD ELVAEFADPS NSTLSPDQQQ YDEKNIRRRV YDALNVLMAM  60
DIISKDKKEI QWKGLPRTSL NDIEELKTER LGLRNRIEKK RAYLQELEDQ YIGLQNLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-331791793PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.99110.0cell culture| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0292459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937951e-109BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027355595.14e-77transcription factor-like protein DPB
SwissprotQ9FNY22e-70DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A067EFJ53e-75A0A067EFJ5_CITSI; Uncharacterized protein
TrEMBLA0A067EGD13e-75A0A067EGD1_CITSI; Uncharacterized protein
TrEMBLA0A2I4ECM36e-75A0A2I4ECM3_JUGRE; transcription factor-like protein DPB isoform X2
TrEMBLA0A2I4ECM45e-75A0A2I4ECM4_JUGRE; transcription factor-like protein DPB isoform X1
STRINGXP_006491709.15e-75(Citrus sinensis)
STRINGXP_006428365.15e-75(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.19e-73Transcription factor DP