PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0292619.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 200aa MW: 22749 Da PI: 9.3122

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0292619.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8.2e-39	80	138	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek+++cprC+st+tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk k+ Lj0g3v0292619.1 80 SEKMIECPRCNSTETKFCYFNNYNVNQPRHFCKSCKRYWTAGGALRNVPVGAGRRKAKS 138 67899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-32	82	138	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	83	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.388	84	138	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	86	122	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MHIYKPTCIV FPPKRQPKPS LLRIILLSLS LLEMAEVERS QESEGIKLFG AMITLHDRKV 60 INEGEKGSEE DEDETVEKKS EKMIECPRCN STETKFCYFN NYNVNQPRHF CKSCKRYWTA 120 GGALRNVPVG AGRRKAKSPP PCHGADGLME GNSDDDQFGL VLDKWHVAKA SQSDFRHAFP 180 AKRRRTNPAQ RTSRSMNPLL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269\|PubMed:19619493}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0292619.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857253	1e-44	DQ857253.1 Glycine max Dof3 mRNA, partial cds.
GenBank	EF221752	1e-44	EF221752.1 Glycine max Dof10 transcription factor (Dof10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014523489.2	2e-70	cyclic dof factor 4
Swissprot	O22967	3e-50	CDF4_ARATH; Cyclic dof factor 4
TrEMBL	A0A1S3VZL4	5e-69	A0A1S3VZL4_VIGRR; cyclic dof factor 4
STRING	XP_007159448.1	2e-60	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6483	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	1e-44	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Bueso E, et al. Arabidopsis COGWHEEL1 links light perception and gibberellins with seed tolerance to deterioration. Plant J., 2016. 87(6): p. 583-96 [PMID:27227784]