PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0293819.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bZIP

Protein Properties

Length: 194aa MW: 22736.5 Da PI: 9.9024

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0293819.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.3	1.4e-07	68	117	14	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R +A+ +R+RK +i+eLe+ +++L ae + ele l ++ l +e+ Lj0g3v0293819.1 68 RHSAQHYRARKVHYIAELERSIQVLHAEGYEVSAELEFLDQQNLILGMEN 117 89*******************************99999999887777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.0E-4	59	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.05E-5	67	118	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-6	68	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MRANRIYSTN QSNSCNDVKF PCFVTTQESD AIYEKQNVSD PQGSFVQQHR CLQPNPSSNR 60 TDSKRVKRHS AQHYRARKVH YIAELERSIQ VLHAEGYEVS AELEFLDQQN LILGMENRAL 120 KQRLDSLSQE QFIKSLEQEV LEKEITRLRN LYQQQQQKQQ QKHHSKPRSK HQDLDASFAK 180 LSLKNKGTEL QKAR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269\|PubMed:19449183}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0293819.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC125481	6e-34	AC125481.23 Medicago truncatula clone mth2-15n13, complete sequence.
GenBank	CT009492	6e-34	CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027343063.1	2e-82	uncharacterized protein At4g06598
Swissprot	F4IN23	2e-21	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A2Z6LVX4	1e-55	A0A2Z6LVX4_TRISU; Uncharacterized protein
TrEMBL	A0A3Q7YFE9	2e-55	A0A3Q7YFE9_CICAR; uncharacterized protein LOC101493956
STRING	AES68260	1e-44	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF27174	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	2e-38	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]