PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0301149.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 155aa    MW: 17763.3 Da    PI: 5.6745
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0301149.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP102.53.2e-3277146278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      CqvegC adls ak yhrrhkvCe+h+kap+vl+s+++qr       fhelsefD++krsCrrrLa+hnerrrk+++
  Lj0g3v0301149.1  77 CQVEGCYADLSGAKAYHRRHKVCEHHAKAPSVLLSEQQQR-------FHELSEFDDTKRSCRRRLAGHNERRRKNAS 146
                      ***********************************99886.......7**************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-2670131IPR004333Transcription factor, SBP-box
PROSITE profilePS5114124.76974144IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.81E-3075147IPR004333Transcription factor, SBP-box
PfamPF031101.3E-2377143IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDGRWSEGKR ILMYKEEGGG XMYKEEDECE EEQEDEEEEE EAVLYGEDGI RKKRVVVTDL  60
YSKRGSKAGG SAVPPSCQVE GCYADLSGAK AYHRRHKVCE HHAKAPSVLL SEQQQRFHEL  120
SEFDDTKRSC RRRLAGHNER RRKNASEFQG EGFNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2668143284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0301149.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060761e-159AP006076.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT19M07, TM0114, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019425272.11e-52PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ387414e-31SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLI3S8Q21e-81I3S8Q2_LOTJA; Squamosa promoter-binding-like protein
STRINGGLYMA13G31090.17e-50(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-30squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]