PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0301319.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HB-other
Protein Properties Length: 210aa    MW: 23005.7 Da    PI: 5.0302
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0301319.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-184499257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      kR+  t+ qle+Le++++ ++ ps+e r eL++klgL +rq ++WF+ rR k+kk
  Lj0g3v0301319.1 44 PKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKK 99
                     69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-1824100IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1636102IPR009057Homeodomain-like
PROSITE profilePS5007116.06640100IPR001356Homeobox domain
SMARTSM003896.3E-1742104IPR001356Homeobox domain
PfamPF000461.7E-154499IPR001356Homeobox domain
CDDcd000861.22E-1545101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEGEAGSEGD SNRKRGSADD NSDENRNEGS NSKIANSNDG QGKPKRQMKT PFQLETLEKA  60
YALDKFPSEE VRVELSQKLG LLDRQLQMWF CHRRLKDKKE MALKKQPQKV EVEPLPDSPV  120
DNLRLGPELG NGYASGSGSG SSPFTRLEPR NGVSRGMPGY YESPQAVMER RAIACVEAQL  180
GEPLRDDGPT LGVEFDPLPP GAFGTPIGCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRLKDKKE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0301319.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159367.11e-88hypothetical protein PHAVU_002G232200g
RefseqXP_028780331.12e-91homeobox-DDT domain protein RLT1-like
SwissprotF4HY564e-54RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLV7CR022e-87V7CR02_PHAVU; Uncharacterized protein
STRINGXP_007159367.14e-88(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15781611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.12e-52homeobox-1