PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0303739.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 575aa    MW: 63908.3 Da    PI: 4.8914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0303739.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS199.52.1e-613435652222
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      + lLl cA+a+++ d+++a++lL+++++++sp gd  qRla+yf+++L+arl++ v++     ++ + ++++ ++ l+ ++++    P  kf+h
  Lj0g3v0303739.1 343 RALLLLCAQAIHTTDNRAANELLKQIRQHSSPFGDGSQRLAHYFANGLEARLFGDVTGAQLFNSTPTHKTTSADDLLKGYQVYLSPNPSRKFAH 436
                      6799**************************************************55554433333333334589999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN++I +  ++ e++HiiDf+i +G++Wp L++ L++R++gpp+lRiTg++ p +g   ++++eetg+rLa+++++++vpfe ++++++++e
  Lj0g3v0303739.1 437 FYANKMIKKVSAKVETLHIIDFGILYGFHWPLLIKFLSERDGGPPKLRITGIEFPLPGfrPTQRIEETGRRLANYCKRFNVPFESTAIASQNWE 530
                      *******************************************************99999***************************9999*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles 222
                      ++++e+L++k++E ++Vn++++ ++llde+ +++s
  Lj0g3v0303739.1 531 TIRVEDLKLKSNEFVVVNCMMRFKNLLDETSEMNS 565
                      ******************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.778316575IPR005202Transcription factor GRAS
PfamPF035147.2E-59343565IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MDPIFSGASD FTNGYQFCEE GSIFVADPNP YAEYLDVFHQ HGNLLDIDPL SFAANTSSVQ  60
GSVTSMSINS VTDPSLEDTD FSETTKFISQ ILMEENLEQG PFYDSLSLQL TEKSFHDALI  120
DNNSSLSPTQ HPLNVQSPYG ETTSSDSDNI SNLHYNSCEL NPPPLDTPHV AVIGDHAFQL  180
NSHGLLDLDA SVNKPLAQNI FSDADLVSQF RRGLEEATKF LLPPEPRIET GLESRGESSN  240
IVEENSFGLK GSIKNRGREE SDSNEEGRST KKSAVGVVDD DDLSDVFDRV LVNMEQLPLG  300
NEHNSLQSGA AKEKQQGEKP TSSDGGKAHP KKQGRKKETV DVRALLLLCA QAIHTTDNRA  360
ANELLKQIRQ HSSPFGDGSQ RLAHYFANGL EARLFGDVTG AQLFNSTPTH KTTSADDLLK  420
GYQVYLSPNP SRKFAHFYAN KMIKKVSAKV ETLHIIDFGI LYGFHWPLLI KFLSERDGGP  480
PKLRITGIEF PLPGFRPTQR IEETGRRLAN YCKRFNVPFE STAIASQNWE TIRVEDLKLK  540
SNEFVVVNCM MRFKNLLDET SEMNSPSLPE MLFCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-303255501219Protein SCARECROW
5b3h_D1e-303255501219Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0303739.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505853.10.0scarecrow-like protein 34
TrEMBLA0A1S2YJS70.0A0A1S2YJS7_CICAR; scarecrow-like protein 34
STRINGXP_004505853.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-100GRAS family protein