PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0306799.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

ERF

Protein Properties

Length: 229aa MW: 25070.2 Da PI: 9.1964

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0306799.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.8	7.3e-20	123	173	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIrdp+ r +r++lg+f tae+Aa+a+++a+ +++ge Lj0g3v0306799.1 123 NYRGVRQRA-WGKWVAEIRDPR----RaTRVWLGTFETAEKAARAYDKAAIEFHGE 173 59**998.******82....48************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.43E-31	122	180	No hit	No description
SMART	SM00380	1.9E-36	123	186	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-31	123	180	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.881	123	180	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.99E-22	123	181	IPR016177	DNA-binding domain
Pfam	PF00847	2.3E-13	123	173	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	124	135	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-11	146	162	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MAVPPVPIEG ALTSLPDQEQ ENSIIVSALT HVISSSSSTM RTNTIQFHGD YLPILDGPKV 60 QQGELESGMV LGGRAMSWGA GGSRNADTCQ VCQISGCLGC NFFWPQQVEA EEKGRIMRRK 120 KKNYRGVRQR AWGKWVAEIR DPRRATRVWL GTFETAEKAA RAYDKAAIEF HGEKAKTNFA 180 FSEYAAANIA QEKQQSVVVA EQKQGGAGLN YNQTKPNNVS SSSSQTQAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	9e-19	122	179	1	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0306799.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SZ06	2e-30	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A396GM96	1e-52	A0A396GM96_MEDTR; Putative transcription factor AP2-EREBP family
STRING	AES85879	2e-53	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2962	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	1e-30	redox responsive transcription factor 1

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]