PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0308719.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 190aa    MW: 21838.3 Da    PI: 5.1897
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0308719.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.3e-097496325
                     S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                     te Cr+++r+G CkyG  C ++H
  Lj0g3v0308719.1 74 TEVCRYYQRYGVCKYGKDCWYIH 96
                     99*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.4095167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6057199IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-67198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-77399IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-77496IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-77498IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.399132153IPR000571Zinc finger, CCCH-type
SMARTSM0035619132156IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGFVSLEKLV GISTQEVTVL IRASERSMNN PATETNVRQK QILVEEELPE RPGEPECRNY  60
LKTGDCKEAT ERSTEVCRYY QRYGVCKYGK DCWYIHTRGN SFDQASERSM TNPATETNDH  120
QKKISEEEFP ERSGEPECRS YLETGDCKSK SDCLPLQNLS DKGLPLRPDQ NVCSHYSCKF  180
ESACKYPYYP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0308719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422887.15e-26PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X2
TrEMBLA0A438GIL56e-23A0A438GIL5_VITVI; Zinc finger CCCH domain-containing protein 67
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.13e-12C3H family protein