PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0311029.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 181aa    MW: 20076.5 Da    PI: 8.9238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0311029.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-184190255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Lj0g3v0311029.1 41 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFCLRG 90
                     69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-3741104IPR001471AP2/ERF domain
PROSITE profilePS5103222.34198IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-214199IPR016177DNA-binding domain
CDDcd000184.22E-2942100No hitNo description
PRINTSPR003671.1E-114253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-304299IPR001471AP2/ERF domain
PfamPF008471.4E-104290IPR001471AP2/ERF domain
PRINTSPR003671.1E-1180100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MMEDRDYCCS TMNSTATRTR ISSTKEKGIT KQNQLEKPMK PYRGIRMRKW GKWVAEIREP  60
NKRSRIWLGS YTTPVAAARA YDTAVFCLRG PSARLNFPEL LFQDQDKDGG DGDGGGGSIQ  120
QGNMSADSIR KKATQVGARV DALQTALHGS SQHSSSNTSS LKPDLNEFPK PEEDCLEALQ  180
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1542991573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in flowers, leaves, and stems, and at very low levels in roots. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0311029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-59AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235779.11e-79dehydration responsive element binding protein
RefseqXP_028201161.11e-79ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC302e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLW6D8341e-78W6D834_9FABA; DREB group protein
STRINGGLYMA14G09320.16e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.18e-46DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]